haplotyper - Tool for Clustering Genotypes in Haplotypes
Function to identify haplotypes within QTL (Quantitative
Trait Loci). One haplotype is a combination of SNP (Single
Nucleotide Polymorphisms) within the QTL. This function groups
together all individuals of a population with the same
haplotype. Each group contains individual with the same allele
in each SNP, whether or not missing data. Thus, haplotyper
groups individuals, that to be imputed, have a non-zero
probability of having the same alleles in the entire sequence
of SNP's. Moreover, haplotyper calculates such probability from
relative frequencies.
