Package: clusterhap 0.1

clusterhap: Clustering Genotypes in Haplotypes

One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.

Authors:Gaston Quero <[email protected]> and Sebastian Simondi <[email protected]> , with contributions from Victoria Bonnecarrere and Lucia Gutierrez

clusterhap_0.1.tar.gz
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clusterhap_0.1.tgz(r-4.4-emscripten)clusterhap_0.1.tgz(r-4.3-emscripten)
clusterhap.pdf |clusterhap.html✨
clusterhap/json (API)

# Install 'clusterhap' in R:
install.packages('clusterhap', repos = c('https://gastonquero.r-universe.dev', 'https://cloud.r-project.org'))

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This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 3 scripts 153 downloads 1 exports 0 dependencies

Last updated 9 years agofrom:4bffa63cf8. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winOKNov 08 2024
R-4.5-linuxOKNov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:clusterhap

Dependencies:

Use clusterhap

Sebastian Simondi,Victoria Bonnecarrere, Lucia Gutierrez, Gaston Quero

Rendered fromclusterhap_vignette.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2016-05-16
Started: 2016-05-16