Package: haplotyper 0.1

haplotyper: Tool for Clustering Genotypes in Haplotypes

Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

Authors:Sebastian Simondi <[email protected]> and Gaston Quero, with contributions from Victoria Bonnecarrere and Lucia Gutierrez

haplotyper_0.1.tar.gz
haplotyper_0.1.zip(r-4.5)haplotyper_0.1.zip(r-4.4)haplotyper_0.1.zip(r-4.3)
haplotyper_0.1.tgz(r-4.4-any)haplotyper_0.1.tgz(r-4.3-any)
haplotyper_0.1.tar.gz(r-4.5-noble)haplotyper_0.1.tar.gz(r-4.4-noble)
haplotyper_0.1.tgz(r-4.4-emscripten)haplotyper_0.1.tgz(r-4.3-emscripten)
haplotyper.pdf |haplotyper.html✨
haplotyper/json (API)

# Install 'haplotyper' in R:
install.packages('haplotyper', repos = c('https://gastonquero.r-universe.dev', 'https://cloud.r-project.org'))

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This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 3 scripts 106 downloads 5 mentions 1 exports 0 dependencies

Last updated 9 years agofrom:9537d5ab5f. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:haplotyper

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Use haplotyper

Sebastian Simondi,Victoria Bonnecarrere, Lucia Gutierrez, Gaston Quero

Rendered fromhaplotyper_vignette.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2016-04-06
Started: 2016-04-06