Package: haplotyper 0.1

haplotyper: Tool for Clustering Genotypes in Haplotypes

Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

Authors:Sebastian Simondi <[email protected]> and Gaston Quero, with contributions from Victoria Bonnecarrere and Lucia Gutierrez

haplotyper_0.1.tar.gz
haplotyper_0.1.zip(r-4.7)haplotyper_0.1.zip(r-4.6)haplotyper_0.1.zip(r-4.5)
haplotyper_0.1.tgz(r-4.6-any)haplotyper_0.1.tgz(r-4.5-any)
haplotyper_0.1.tar.gz(r-4.7-any)haplotyper_0.1.tar.gz(r-4.6-any)
haplotyper_0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
haplotyper/json (API)

# Install 'haplotyper' in R:
install.packages('haplotyper', repos = c('https://gastonquero.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 3 scripts 204 downloads 5 mentions 1 exports 0 dependencies

Last updated from:9537d5ab5f. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK111
source / vignettesOK175
linux-release-x86_64OK93
macos-release-arm64OK143
macos-oldrel-arm64OK71
windows-develOK77
windows-releaseOK67
windows-oldrelOK74
wasm-releaseOK90

Exports:haplotyper

Dependencies:

Use haplotyper

Sebastian Simondi,Victoria Bonnecarrere, Lucia Gutierrez, Gaston Quero

Rendered fromhaplotyper_vignette.Rmdusingknitr::rmarkdownon May 07 2026.

Last update: 2016-04-06
Started: 2016-04-06